Running the reconstruction¶
First, start an ipcluster for speeding up the coil sensitivity estimation:
ipcluster start -n N
where N amounts to the number of processe to be used. If -n N is ommited, as many processes as number of CPU cores available are started.
Reconstruction of the parameter maps can be started either using the terminal by typing:
or from python by:
import pyqmri pyqmri.run()
A list of accepted flags can be printed using
or by fewing the documentation of pyqmri.pyqmri in python.
If reconstructing fewer slices from the volume than acquired, slices will be picked symmetrically from the center of the volume. E.g. reconstructing only a single slice will reconstruct the center slice of the volume.