PyQMRI
stable
Quickstart Guide
Installation Guide
Running the reconstruction
Prerequests on the .h5 file
The config file (*.ini)
API Documentation
Index
Module Index
PyQMRI
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Index
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Index
A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
A
adj() (pyqmri.operator.Operator method)
(pyqmri.operator.OperatorFiniteGradient method)
(pyqmri.operator.OperatorFiniteGradientStreamed method)
(pyqmri.operator.OperatorFiniteSymGradient method)
(pyqmri.operator.OperatorFiniteSymGradientStreamed method)
(pyqmri.operator.OperatorImagespace method)
(pyqmri.operator.OperatorImagespaceStreamed method)
(pyqmri.operator.OperatorKspace method)
(pyqmri.operator.OperatorKspaceSMS method)
(pyqmri.operator.OperatorKspaceSMSStreamed method)
(pyqmri.operator.OperatorKspaceStreamed method)
adjKyk1() (pyqmri.operator.OperatorImagespace method)
(pyqmri.operator.OperatorImagespaceStreamed method)
(pyqmri.operator.OperatorKspace method)
(pyqmri.operator.OperatorKspaceSMS method)
(pyqmri.operator.OperatorKspaceSMSStreamed method)
(pyqmri.operator.OperatorKspaceStreamed method)
adjoop() (pyqmri.operator.Operator method)
(pyqmri.operator.OperatorFiniteGradient method)
(pyqmri.operator.OperatorFiniteGradientStreamed method)
(pyqmri.operator.OperatorFiniteSymGradient method)
(pyqmri.operator.OperatorFiniteSymGradientStreamed method)
(pyqmri.operator.OperatorImagespace method)
(pyqmri.operator.OperatorImagespaceStreamed method)
(pyqmri.operator.OperatorKspace method)
(pyqmri.operator.OperatorKspaceSMS method)
(pyqmri.operator.OperatorKspaceSMSStreamed method)
(pyqmri.operator.OperatorKspaceStreamed method)
adjstr (pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
adjstrKyk1 (pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
alpha (pyqmri.solver.PDSolverStreamedTGV attribute)
(pyqmri.solver.PDSolverStreamedTGVSMS attribute)
(pyqmri.solver.PDSolverStreamedTV attribute)
(pyqmri.solver.PDSolverStreamedTVSMS attribute)
(pyqmri.solver.PDSolverTGV attribute)
(pyqmri.solver.PDSolverTV attribute)
at_end (pyqmri.streaming.Stream attribute)
B
b (pyqmri.models.DiffdirLL.Model attribute)
b0 (pyqmri.models.DiffdirLL.Model attribute)
BaseModel (class in pyqmri.models.template)
beta (pyqmri.solver.PDSolverStreamedTGV attribute)
(pyqmri.solver.PDSolverStreamedTGVSMS attribute)
(pyqmri.solver.PDSolverTGV attribute)
beta_line (pyqmri.solver.PDBaseSolver attribute)
C
CGSolver (class in pyqmri.solver)
CGSolver_H1 (class in pyqmri.solver)
cl_deapo (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
cl_kerneltable (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
computeInitialGuess() (pyqmri.models.BiExpDecay.Model method)
(pyqmri.models.DiffdirLL.Model method)
(pyqmri.models.GeneralModel.Model method)
(pyqmri.models.IRLL.Model method)
(pyqmri.models.ImageReco.Model method)
(pyqmri.models.VFA.Model method)
(pyqmri.models.template.BaseModel method)
connectouttoin() (pyqmri.streaming.Stream method)
constraints (class in pyqmri.models.template)
(pyqmri.models.template.BaseModel attribute)
(pyqmri.models.template.constraints attribute)
create() (pyqmri.transforms.PyOpenCLnuFFT static method)
ctx (pyqmri.operator.Operator attribute)
(pyqmri.operator.OperatorFiniteGradient attribute)
(pyqmri.operator.OperatorFiniteGradientStreamed attribute)
(pyqmri.operator.OperatorFiniteSymGradient attribute)
(pyqmri.operator.OperatorFiniteSymGradientStreamed attribute)
(pyqmri.operator.OperatorImagespace attribute)
(pyqmri.operator.OperatorKspace attribute)
(pyqmri.operator.OperatorKspaceSMS attribute)
(pyqmri.transforms.PyOpenCLnuFFT attribute)
D
dat_trans_axes (pyqmri.operator.OperatorKspaceSMSStreamed attribute)
data_shape (pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
(pyqmri.solver.PDSolverStreamed attribute)
data_shape_T (pyqmri.solver.PDSolverStreamed attribute)
data_trans_axes (pyqmri.solver.PDSolverStreamed attribute)
dcf (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
delta (pyqmri.solver.PDBaseSolver attribute)
dimX (pyqmri.operator.Operator attribute)
dimY (pyqmri.operator.Operator attribute)
dir (pyqmri.models.DiffdirLL.Model attribute)
display_iterations (pyqmri.solver.PDBaseSolver attribute)
DTYPE (pyqmri.operator.Operator.self attribute)
(pyqmri.transforms.PyOpenCLnuFFT attribute)
DTYPE_real (pyqmri.operator.Operator.self attribute)
(pyqmri.transforms.PyOpenCLnuFFT attribute)
dz (pyqmri.operator.Operator attribute)
(pyqmri.solver.PDBaseSolver attribute)
E
eval() (pyqmri.streaming.Stream method)
eval_fwd_kspace_cg() (pyqmri.solver.CGSolver method)
evalwithnorm() (pyqmri.streaming.Stream method)
execute() (pyqmri.irgn.IRGNOptimizer method)
execute_forward() (pyqmri.models.template.BaseModel method)
execute_gradient() (pyqmri.models.template.BaseModel method)
F
fa (pyqmri.models.IRLL.Model attribute)
(pyqmri.models.VFA.Model attribute)
factory() (pyqmri.solver.PDBaseSolver static method)
fft (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLCartNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
FFT() (pyqmri.transforms.PyOpenCL3DRadialNUFFT method)
(pyqmri.transforms.PyOpenCLCartNUFFT method)
(pyqmri.transforms.PyOpenCLRadialNUFFT method)
(pyqmri.transforms.PyOpenCLSMSNUFFT method)
fft_dim (pyqmri.transforms.PyOpenCLnuFFT attribute)
fft_scale (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLCartNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
fft_shape (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLCartNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
FFTH() (pyqmri.transforms.PyOpenCL3DRadialNUFFT method)
(pyqmri.transforms.PyOpenCLCartNUFFT method)
(pyqmri.transforms.PyOpenCLRadialNUFFT method)
(pyqmri.transforms.PyOpenCLSMSNUFFT method)
figure (pyqmri.models.template.constraints attribute)
FTHstr (pyqmri.operator.OperatorKspaceSMSStreamed attribute)
FTstr (pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
fun (pyqmri.streaming.Stream attribute)
fwd() (pyqmri.operator.Operator method)
(pyqmri.operator.OperatorFiniteGradient method)
(pyqmri.operator.OperatorFiniteGradientStreamed method)
(pyqmri.operator.OperatorFiniteSymGradient method)
(pyqmri.operator.OperatorFiniteSymGradientStreamed method)
(pyqmri.operator.OperatorImagespace method)
(pyqmri.operator.OperatorImagespaceStreamed method)
(pyqmri.operator.OperatorKspace method)
(pyqmri.operator.OperatorKspaceSMS method)
(pyqmri.operator.OperatorKspaceSMSStreamed method)
(pyqmri.operator.OperatorKspaceStreamed method)
fwdoop() (pyqmri.operator.Operator method)
(pyqmri.operator.OperatorFiniteGradient method)
(pyqmri.operator.OperatorFiniteGradientStreamed method)
(pyqmri.operator.OperatorFiniteSymGradient method)
(pyqmri.operator.OperatorFiniteSymGradientStreamed method)
(pyqmri.operator.OperatorImagespace method)
(pyqmri.operator.OperatorImagespaceStreamed method)
(pyqmri.operator.OperatorKspace method)
(pyqmri.operator.OperatorKspaceSMS method)
(pyqmri.operator.OperatorKspaceSMSStreamed method)
(pyqmri.operator.OperatorKspaceStreamed method)
fwdstr (pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
G
genDefaultModelfile() (in module pyqmri.models.GeneralModel)
getStreamedGradientObject() (pyqmri.operator.OperatorFiniteGradientStreamed method)
getStreamedSymGradientObject() (pyqmri.operator.OperatorFiniteSymGradientStreamed method)
gn_res (pyqmri.irgn.IRGNOptimizer attribute)
grad (pyqmri.models.GeneralModel.Model attribute)
grad_shape (pyqmri.solver.PDSolverStreamed attribute)
GradientOperatorFactory() (pyqmri.operator.Operator static method)
guess (pyqmri.models.BiExpDecay.Model attribute)
(pyqmri.models.DiffdirLL.Model attribute)
(pyqmri.models.IRLL.Model attribute)
(pyqmri.models.ImageReco.Model attribute)
(pyqmri.models.VFA.Model attribute)
I
indphase (pyqmri.models.GeneralModel.Model attribute)
init_values (pyqmri.models.GeneralModel.Model attribute)
inp (pyqmri.streaming.Stream attribute)
irgn_par (pyqmri.irgn.IRGNOptimizer attribute)
IRGNOptimizer (class in pyqmri.irgn)
L
lambd (pyqmri.solver.PDBaseSolver attribute)
lhs (pyqmri.streaming.Stream attribute)
M
mask (pyqmri.transforms.PyOpenCLCartNUFFT attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
max_const (pyqmri.solver.PDBaseSolver attribute)
MB (pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
min_const (pyqmri.solver.PDBaseSolver attribute)
Model (class in pyqmri.models.BiExpDecay)
(class in pyqmri.models.DiffdirLL)
(class in pyqmri.models.GeneralModel)
(class in pyqmri.models.IRLL)
(class in pyqmri.models.ImageReco)
(class in pyqmri.models.VFA)
model (pyqmri.solver.PDBaseSolver attribute)
model_deriv_shape (pyqmri.solver.PDSolverStreamed attribute)
modelgrad (pyqmri.solver.PDBaseSolver attribute)
modelparams (pyqmri.models.GeneralModel.Model attribute)
MRIOperatorFactory() (pyqmri.operator.Operator static method)
mu (pyqmri.solver.PDBaseSolver attribute)
N
N (pyqmri.operator.Operator attribute)
NC (pyqmri.operator.Operator attribute)
Nproj (pyqmri.models.IRLL.Model attribute)
(pyqmri.operator.Operator attribute)
Nproj_measrued (pyqmri.models.IRLL.Model attribute)
NScan (pyqmri.models.template.BaseModel attribute)
(pyqmri.models.template.constraints attribute)
(pyqmri.operator.Operator attribute)
NSlice (pyqmri.models.template.BaseModel attribute)
(pyqmri.models.template.constraints attribute)
(pyqmri.operator.Operator attribute)
(pyqmri.streaming.Stream attribute)
NUFFT (pyqmri.operator.Operator attribute)
(pyqmri.operator.OperatorKspace attribute)
(pyqmri.operator.OperatorKspaceSMS attribute)
(pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
num_dev (pyqmri.operator.Operator attribute)
(pyqmri.solver.PDBaseSolver attribute)
(pyqmri.streaming.Stream attribute)
num_fun (pyqmri.streaming.Stream attribute)
O
ogf (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
omega (pyqmri.solver.PDBaseSolver attribute)
Operator (class in pyqmri.operator)
OperatorFiniteGradient (class in pyqmri.operator)
OperatorFiniteGradientStreamed (class in pyqmri.operator)
OperatorFiniteSymGradient (class in pyqmri.operator)
OperatorFiniteSymGradientStreamed (class in pyqmri.operator)
OperatorImagespace (class in pyqmri.operator)
OperatorImagespaceStreamed (class in pyqmri.operator)
OperatorKspace (class in pyqmri.operator)
OperatorKspaceSMS (class in pyqmri.operator)
OperatorKspaceSMSStreamed (class in pyqmri.operator)
OperatorKspaceStreamed (class in pyqmri.operator)
outp (pyqmri.streaming.Stream attribute)
overlap (pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
(pyqmri.streaming.Stream attribute)
P
packs (pyqmri.operator.OperatorKspaceSMS attribute)
(pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
par (pyqmri.irgn.IRGNOptimizer attribute)
par_fft (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLCartNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
par_slices (pyqmri.operator.OperatorFiniteGradientStreamed attribute)
(pyqmri.operator.OperatorFiniteSymGradientStreamed attribute)
(pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceSMSStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
PDBaseSolver (class in pyqmri.solver)
PDSolverStreamed (class in pyqmri.solver)
PDSolverStreamedTGV (class in pyqmri.solver)
PDSolverStreamedTGVSMS (class in pyqmri.solver)
PDSolverStreamedTV (class in pyqmri.solver)
PDSolverStreamedTVSMS (class in pyqmri.solver)
PDSolverTGV (class in pyqmri.solver)
PDSolverTV (class in pyqmri.solver)
phase (pyqmri.models.DiffdirLL.Model attribute)
plot_unknowns() (pyqmri.models.template.BaseModel method)
power_iteration() (pyqmri.solver.CGSolver_H1 method)
power_iteration_grad() (pyqmri.solver.CGSolver_H1 method)
prg (pyqmri.operator.Operator attribute)
(pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLCartNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
(pyqmri.transforms.PyOpenCLnuFFT attribute)
PyOpenCL3DRadialNUFFT (class in pyqmri.transforms)
PyOpenCLCartNUFFT (class in pyqmri.transforms)
PyOpenCLnuFFT (class in pyqmri.transforms)
PyOpenCLRadialNUFFT (class in pyqmri.transforms)
PyOpenCLSMSNUFFT (class in pyqmri.transforms)
pyqmri (module)
pyqmri.irgn (module)
pyqmri.models (module)
pyqmri.models.BiExpDecay (module)
pyqmri.models.DiffdirLL (module)
pyqmri.models.GeneralModel (module)
pyqmri.models.ImageReco (module)
pyqmri.models.IRLL (module)
pyqmri.models.template (module)
pyqmri.models.VFA (module)
pyqmri.operator (module)
pyqmri.pyqmri (module)
pyqmri.solver (module)
pyqmri.streaming (module)
pyqmri.transforms (module)
Q
queue (pyqmri.operator.Operator attribute)
(pyqmri.operator.OperatorFiniteGradient attribute)
(pyqmri.operator.OperatorFiniteGradientStreamed attribute)
(pyqmri.operator.OperatorFiniteSymGradient attribute)
(pyqmri.operator.OperatorFiniteSymGradientStreamed attribute)
(pyqmri.operator.OperatorImagespace attribute)
(pyqmri.operator.OperatorKspace attribute)
(pyqmri.operator.OperatorKspaceSMS attribute)
(pyqmri.streaming.Stream attribute)
(pyqmri.transforms.PyOpenCLnuFFT attribute)
R
ratio (pyqmri.operator.OperatorFiniteGradient attribute)
(pyqmri.operator.OperatorFiniteGradientStreamed attribute)
(pyqmri.operator.OperatorFiniteSymGradient attribute)
(pyqmri.operator.OperatorFiniteSymGradientStreamed attribute)
real_const (pyqmri.solver.PDBaseSolver attribute)
rescale() (pyqmri.models.BiExpDecay.Model method)
(pyqmri.models.DiffdirLL.Model method)
(pyqmri.models.GeneralModel.Model method)
(pyqmri.models.IRLL.Model method)
(pyqmri.models.ImageReco.Model method)
(pyqmri.models.VFA.Model method)
(pyqmri.models.template.BaseModel method)
rescalefun (pyqmri.models.GeneralModel.Model attribute)
reverse (pyqmri.streaming.Stream attribute)
run() (in module pyqmri.pyqmri)
(pyqmri.solver.CGSolver method)
(pyqmri.solver.CGSolver_H1 method)
(pyqmri.solver.PDBaseSolver method)
S
scale (pyqmri.models.IRLL.Model attribute)
setFvalInit() (pyqmri.solver.CGSolver_H1 method)
(pyqmri.solver.PDBaseSolver method)
shift (pyqmri.transforms.PyOpenCLSMSNUFFT attribute)
signaleq (pyqmri.models.GeneralModel.Model attribute)
slices (pyqmri.streaming.Stream attribute)
stag (pyqmri.solver.PDBaseSolver attribute)
Stream (class in pyqmri.streaming)
symgrad_shape (pyqmri.solver.PDSolverStreamed attribute)
(pyqmri.solver.PDSolverStreamedTGV attribute)
(pyqmri.solver.PDSolverStreamedTGVSMS attribute)
(pyqmri.solver.PDSolverStreamedTV attribute)
(pyqmri.solver.PDSolverStreamedTVSMS attribute)
SymGradientOperatorFactory() (pyqmri.operator.Operator static method)
T
tau (pyqmri.models.IRLL.Model attribute)
(pyqmri.solver.PDBaseSolver attribute)
td (pyqmri.models.IRLL.Model attribute)
TE (pyqmri.models.BiExpDecay.Model attribute)
theta_line (pyqmri.solver.PDBaseSolver attribute)
tol (pyqmri.solver.PDBaseSolver attribute)
TR (pyqmri.models.IRLL.Model attribute)
(pyqmri.models.VFA.Model attribute)
traj (pyqmri.transforms.PyOpenCL3DRadialNUFFT attribute)
(pyqmri.transforms.PyOpenCLRadialNUFFT attribute)
U
uk_scale (pyqmri.models.BiExpDecay.Model attribute)
(pyqmri.models.DiffdirLL.Model attribute)
(pyqmri.models.IRLL.Model attribute)
(pyqmri.models.VFA.Model attribute)
unknown_shape (pyqmri.operator.OperatorImagespaceStreamed attribute)
(pyqmri.operator.OperatorKspaceStreamed attribute)
(pyqmri.solver.PDSolverStreamed attribute)
unknowns (pyqmri.operator.Operator attribute)
(pyqmri.solver.PDBaseSolver attribute)
unknowns_H1 (pyqmri.operator.Operator attribute)
(pyqmri.solver.PDBaseSolver attribute)
unknowns_TGV (pyqmri.operator.Operator attribute)
unknwons_TGV (pyqmri.solver.PDBaseSolver attribute)
update() (pyqmri.models.template.constraints method)
update_box() (pyqmri.solver.CGSolver_H1 method)
update_Kyk2() (pyqmri.solver.PDBaseSolver method)
update_primal() (pyqmri.solver.PDBaseSolver method)
update_r() (pyqmri.solver.PDBaseSolver method)
update_v() (pyqmri.solver.PDBaseSolver method)
update_z1() (pyqmri.solver.PDBaseSolver method)
update_z1_tv() (pyqmri.solver.PDBaseSolver method)
update_z2() (pyqmri.solver.PDBaseSolver method)
updateKyk1SMSstreamed (pyqmri.operator.OperatorKspaceSMSStreamed attribute)
updateRatio() (pyqmri.operator.OperatorFiniteGradient method)
(pyqmri.operator.OperatorFiniteGradientStreamed method)
(pyqmri.operator.OperatorFiniteSymGradient method)
(pyqmri.operator.OperatorFiniteSymGradientStreamed method)
updateRegPar() (pyqmri.solver.CGSolver_H1 method)
(pyqmri.solver.PDBaseSolver method)
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