Running the reconstructionΒΆ

First, start an ipcluster for speeding up the coil sensitivity estimation:

ipcluster start -n N

where N amounts to the number of processe to be used. If -n N is ommited, as many processes as number of CPU cores available are started.

Reconstruction of the parameter maps can be started either using the terminal by typing:


or from python by:

import pyqmri

A list of accepted flags can be printed using

pyqmri -h

or by fewing the documentation of pyqmri.pyqmri in python.

If reconstructing fewer slices from the volume than acquired, slices will be picked symmetrically from the center of the volume. E.g. reconstructing only a single slice will reconstruct the center slice of the volume.