Running the reconstructionΒΆ
First, start an ipcluster for speeding up the coil sensitivity estimation:
ipcluster start -n N
where N amounts to the number of processe to be used. If -n N is ommited, as many processes as number of CPU cores available are started.
Reconstruction of the parameter maps can be started either using the terminal by typing:
pyqmri
or from python by:
import pyqmri
pyqmri.run()
A list of accepted flags can be printed using
pyqmri -h
or by fewing the documentation of pyqmri.pyqmri in python.
If reconstructing fewer slices from the volume than acquired, slices will be picked symmetrically from the center of the volume. E.g. reconstructing only a single slice will reconstruct the center slice of the volume.